doing my best to write more…
This tutorial sets up the Pekosz Lab influenza workflow in a single conda environment, runs it on a small teaching dataset containing 20 H1N1, 20 H3N2, and 20 B/Victoria strains generated by Dr. Heba Mostafa’s Lab at the Johns Hopkins Hospital, then walks through adding new sequencing runs for a production build.
A basic tutorial for building and visualizing time-resolved phylogenetic trees
A collection of Tools I frequently use for my PhD studies in Molecular Virology. Updated 2025-10-14.
